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KMID : 0364820230590030217
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Korean Journal of Microbiology
2023 Volume.59 No. 3 p.217 ~ p.219
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Complete genome sequence of Amycolatopsis sp. strain FBCC-B4732, an actinobacterium isolated from hyporheic freshwater
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Choi Ah-Young
Baek Ki-Woon
Jang Su-Min
Nam Yoon-Jong
Ryu Young-Soo
Chung Eu-Jin
Ryu Shi-Hyun
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Abstract
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An actinobacterial strain, designated Amycolatopsis sp. FBCC-B4732 (= KACC 23265) was isolated from hyporheic freshwater. The complete genome is of high quality and consists of a circular chromosome, measuring 10,190,959 bp with a 71.5% G + C content. Genome annotation revealed that the genome comprises 9,344 genes, including 9,120 protein-coding genes, 12 rRNAs, 51 tRNAs, 3 ncRNAs, and 158 pseudogenes. The analysis of the biosynthetic gene cluster for secondary metabolites revealed that FBCC-B4732 has 37 biosynthetic clusters. The analysis of the genome revealed the existence of pathways for synthesizing antibacterial compounds.
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KEYWORD
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Amycolatopsis sp., complete genome, hyporheic freshwater
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